![]() Additionally, Colocalization Threshold is a tool that can conduct threshold-based colocalization analysis by setting a minimum intensity value for each channel. JACoP is another plugin that can perform several colocalization methods with the ability to generate scatter plots and colocalization maps. It can also generate scatter plots, intensity profiles, and colocalization maps. For example, Coloc 2 is a comprehensive plugin that can carry out various methods like Pearson's correlation coefficient, Manders' coefficients, Costes' automatic thresholding, Li's intensity correlation quotient, and van Steensel's cross-correlation function. Tactile theme by Jason Long.Fiji offers several plugins and tools to perform colocalization analysis. ThunderSTORM: a comprehensive ImageJ plugin for PALM and STORM data analysis and super-resolution imaging. If you use ThunderSTORM to process your data, please, cite our paper: ThunderSTORM is also fully interoperable with other ImageJ plugins, thus the functionality can be indirectly extend by adding new plugins into ImageJ.
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